Building the Embrapa rice breeding dataset for efficient data reuse

نویسندگان

چکیده

Embrapa has led breeding programs for irrigated and upland rice (Oryza sativa L.) since 1977, generating a large amount of pedigree phenotypic data. However, there were no systematic standards data recording nor long-term preservation reuse strategies. With the new aim making practical, we recovered all available structured it into Rice Breeding Dataset (ERBD). In its current version, ERBD includes 20,504 crosses involving 9,974 parents, pedigrees most 4,532 inbred lines that took part in advanced field trials, from 2,711 trials (1,118 irrigated, 1,593 trials), representing 226,458 plots. Those conducted over 38 years (1982–2019), 247 locations, latitudes ranging 3°N to 33°S. Phenotypic traits included grain yield, days flowering, plant height, canopy lodging, five important fungal diseases: leaf blast, panicle brown spot, scald, discoloration. The total number points surpasses 1.27 million. Descriptive statistics computed dataset, split by cropping systems (irrigated or upland). mean heritability yield was high both systems, at around .7, whereas coefficient variation 13.9% 18.7% trials. offers possibility conducting studies on different aspects genetics, including genetic gain, G×E analysis, genome-wide association genomic prediction.

برای دانلود باید عضویت طلایی داشته باشید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Rice Breeding

This chapter deals with breeding aspects of one of the most important crops for food security in the world. Initially it shows how diverse rice is with 22 species, different levels of ploidy and six diversity groups. The choice of parents for crossing, when having such wide genetic diversity available, requires careful characterization and evaluation of the germplasm as well as good knowledge a...

متن کامل

Building Software Reuse Library with Efficient Keyword based Search Mechanism

Software reuse is the use of existing software components to build a software system. Effective storage and retrieval of software components is much essential in reuse process. The researchers have developed a number of software reuse techniques for storage and retrieval of components. No one technique is complete in its own; every technique has its own merits and demerits. This paper presents ...

متن کامل

Evaluation of Updating Methods in Building Blocks Dataset

With the increasing use of spatial data in daily life, the production of this data from diverse information sources with different precision and scales has grown widely. Generating new data requires a great deal of time and money. Therefore, one solution is to reduce costs is to update the old data at different scales using new data (produced on a similar scale). One approach to updating data i...

متن کامل

Breeding for Iron-dense Rice in Bangladesh

Fifty rice varieties collected under different categories from various sources were grown at the BRRI field during the 2001 transplant aman season ( July–November). Precautions were taken during harvest and processing to prevent mineral contamination. All samples were hand-pounded before being analyzed for iron and zinc content. The iron and zinc content varied considerably within the different...

متن کامل

Power of conventional rice breeding

With the decreasing trend in rice consumption in Japan, breeding for new types of rice plant, which is a major responsibility of breeders has also become a political issue. The need for restoring Japanese agriculture and maintaining self-sufficiency in rice production has always been tightly linked to economic partnership agreements and trade liberalization. As a result, rice production has bee...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

ژورنال

عنوان ژورنال: Crop Science

سال: 2021

ISSN: ['1435-0653', '0011-183X']

DOI: https://doi.org/10.1002/csc2.20550